PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g062530.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 83aa    MW: 9469.56 Da    PI: 6.7912
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g062530.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.4e-192677556
                        SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        ++++ eq+++L ++F+k++ +++++ ++L ++ gL+ +qVk+WFqNrRa+ k
  Solyc08g062530.1.1 26 HKYSMEQIQILDAFFKKCPQLDEDQQKQLGSEAGLDHKQVKFWFQNRRAQAK 77
                        6899*********************************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-18577IPR009057Homeodomain-like
SuperFamilySSF466895.56E-16877IPR009057Homeodomain-like
SMARTSM003891.3E-61682IPR001356Homeobox domain
PROSITE profilePS5007113.7991979IPR001356Homeobox domain
PfamPF000463.7E-162677IPR001356Homeobox domain
CDDcd000866.60E-132677No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MTDSGEEPAG ESSNSQKRSE SHGQYHKYSM EQIQILDAFF KKCPQLDEDQ QKQLGSEAGL  60
DHKQVKFWFQ NRRAQAKVIL II*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0109306e-71Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0034G06, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010325241.13e-47PREDICTED: homeobox-leucine zipper protein ROC9-like
SwissprotQ69T582e-20ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLK4CL411e-55K4CL41_SOLLC; Uncharacterized protein
STRINGSolyc08g062530.1.13e-55(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2900722
Representative plantOGRP14515136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17320.11e-18homeodomain GLABROUS 9
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]